Merge pull request 'Smol refactor' (#1) from smol_refactor into master

Reviewed-on: #1

Cargo.toml

@@ -1,22 +1,14 @@
 [package]
 name = "mycelial_technology"
-version = "0.1.0"
+version = "0.2.0"
 authors = ["glyph <glyph@mycelial.technology>"]
 edition = "2018"
 
-# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
-
 [dependencies]
 log = "0.4"
 regex = "1"
-rocket = "0.4"
+rocket = "0.5.0-rc.1"
+rocket_dyn_templates = { version = "0.1.0-rc.1", features = ["tera"] }
 rss = "1"
-serde = "1"
-serde_derive = "1"
-serde_json = "1"
+miniserde = "0.1"
 tera = "1"
-
-[dependencies.rocket_contrib]
-version = "0.4"
-default-features = false
-features = ["json", "tera_templates"]

src/bin/generate_rss.rs

@@ -1,12 +1,12 @@
 extern crate regex;
 extern crate rss;
 
+use regex::Regex;
+use rss::{ChannelBuilder, Item};
 use std::error;
 use std::fs;
 use std::fs::File;
 use std::io::prelude::*;
-use regex::Regex;
-use rss::{ChannelBuilder, Item};
 
 fn main() -> Result<(), Box<dyn error::Error>> {
     // create rss channel for mycelial.technology
@@ -25,11 +25,7 @@ fn main() -> Result<(), Box<dyn error::Error>> {
     let plants = "./templates/plants";
 
     // add directories to a vector
-    let mut dirs = Vec::new();
-    dirs.push(bacteria);
-    dirs.push(computers);
-    dirs.push(fungi);
-    dirs.push(plants);
+    let dirs = vec![bacteria, computers, fungi, plants];
 
     // create vectors for item fields
     let mut titles = Vec::new();
@@ -46,8 +42,7 @@ fn main() -> Result<(), Box<dyn error::Error>> {
             // populate item url vector from article filenames
             let re_url = Regex::new("./templates/(.*).html.tera")?;
             let caps_url = re_url.captures(
-                &path
-                    .to_str()
+                path.to_str()
                     .expect("Failed to convert file path to string slice for regex capture"),
             );
             if let Some(url) = caps_url {

src/main.rs

@@ -1,18 +1,16 @@
 #![feature(proc_macro_hygiene, decl_macro)]
 
-#[macro_use]
 extern crate log;
 #[macro_use]
 extern crate rocket;
-extern crate rocket_contrib;
-#[macro_use]
-extern crate serde_derive;
 extern crate tera;
 
-use std::path::{Path, PathBuf};
-
-use rocket::response::NamedFile;
-use rocket_contrib::templates::Template;
+use miniserde::{json, Serialize};
+use rocket::{
+    fs::{relative, FileServer},
+    get, routes,
+};
+use rocket_dyn_templates::Template;
 
 #[derive(Debug, Serialize)]
 struct FlashContext {
@@ -20,18 +18,13 @@ struct FlashContext {
     flash_msg: Option<String>,
 }
 
-#[get("/<file..>")]
-fn files(file: PathBuf) -> Option<NamedFile> {
-    NamedFile::open(Path::new("static/").join(file)).ok()
-}
-
 #[get("/art")]
 fn art() -> Template {
     let context = FlashContext {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("art", &context)
+    Template::render("art", json::to_string(&context))
 }
 
 #[get("/background")]
@@ -40,7 +33,7 @@ fn background() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("background", &context)
+    Template::render("background", json::to_string(&context))
 }
 
 #[get("/bacteria")]
@@ -49,7 +42,7 @@ fn bacteria() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("bacteria", &context)
+    Template::render("bacteria", json::to_string(&context))
 }
 
 #[get("/bacteria/sauerkraut-beginnings")]
@@ -58,7 +51,7 @@ fn bacteria_sauerkraut_beginnings() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("bacteria/sauerkraut_beginnings", &context)
+    Template::render("bacteria/sauerkraut_beginnings", json::to_string(&context))
 }
 
 #[get("/bacteria/sauerkraut-bottled")]
@@ -67,7 +60,7 @@ fn bacteria_sauerkraut_bottled() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("bacteria/sauerkraut_bottled", &context)
+    Template::render("bacteria/sauerkraut_bottled", json::to_string(&context))
 }
 
 #[get("/computers")]
@@ -76,7 +69,7 @@ fn computers() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("computers", &context)
+    Template::render("computers", json::to_string(&context))
 }
 
 #[get("/computers/esp8266-dht11")]
@@ -85,7 +78,7 @@ fn computers_esp8266_dht11() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("computers/esp8266_dht11", &context)
+    Template::render("computers/esp8266_dht11", json::to_string(&context))
 }
 
 #[get("/computers/i2c-adventures")]
@@ -94,7 +87,7 @@ fn computers_i2c_adventures() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("computers/i2c_adventures", &context)
+    Template::render("computers/i2c_adventures", json::to_string(&context))
 }
 
 #[get("/computers/rust-compilation")]
@@ -103,7 +96,7 @@ fn computers_rust_compilation() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("computers/rust_compilation", &context)
+    Template::render("computers/rust_compilation", json::to_string(&context))
 }
 
 #[get("/fungi")]
@@ -112,7 +105,7 @@ fn fungi() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi", &context)
+    Template::render("fungi", json::to_string(&context))
 }
 
 #[get("/fungi/design-patterns")]
@@ -121,7 +114,7 @@ fn fungi_design_patterns() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/design_patterns", &context)
+    Template::render("fungi/design_patterns", json::to_string(&context))
 }
 
 #[get("/fungi/glossary")]
@@ -130,7 +123,7 @@ fn fungi_glossary() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/glossary", &context)
+    Template::render("fungi/glossary", json::to_string(&context))
 }
 
 #[get("/fungi/grow-forests")]
@@ -139,7 +132,7 @@ fn fungi_grow_forests() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/grow_forests", &context)
+    Template::render("fungi/grow_forests", json::to_string(&context))
 }
 
 #[get("/fungi/grow-together")]
@@ -148,7 +141,7 @@ fn fungi_grow_together() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/grow_together", &context)
+    Template::render("fungi/grow_together", json::to_string(&context))
 }
 
 #[get("/fungi/lichen-space")]
@@ -157,7 +150,7 @@ fn fungi_lichen_space() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/lichen_space", &context)
+    Template::render("fungi/lichen_space", json::to_string(&context))
 }
 
 #[get("/fungi/network-resilience")]
@@ -166,7 +159,7 @@ fn fungi_network_resilience() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/network_resilience", &context)
+    Template::render("fungi/network_resilience", json::to_string(&context))
 }
 
 #[get("/fungi/photo-guide")]
@@ -175,7 +168,16 @@ fn fungi_photo_guide() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("fungi/photo_guide", &context)
+    Template::render("fungi/photo_guide", json::to_string(&context))
+}
+
+#[get("/fungi/reading-list")]
+fn fungi_reading_list() -> Template {
+    let context = FlashContext {
+        flash_name: None,
+        flash_msg: None,
+    };
+    Template::render("fungi/reading_list", json::to_string(&context))
 }
 
 #[get("/")]
@@ -184,7 +186,7 @@ fn home() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("home", &context)
+    Template::render("home", json::to_string(&context))
 }
 
 #[get("/lists")]
@@ -193,7 +195,7 @@ fn lists() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("lists", &context)
+    Template::render("lists", json::to_string(&context))
 }
 
 #[get("/meditation")]
@@ -202,7 +204,7 @@ fn meditation() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("meditation", &context)
+    Template::render("meditation", json::to_string(&context))
 }
 
 #[get("/plants")]
@@ -211,7 +213,7 @@ fn plants() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("plants", &context)
+    Template::render("plants", json::to_string(&context))
 }
 
 #[get("/plants/aloe-there")]
@@ -220,7 +222,7 @@ fn plants_aloe_there() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("plants/aloe_there", &context)
+    Template::render("plants/aloe_there", json::to_string(&context))
 }
 
 #[get("/plants/blueberry-dance")]
@@ -229,7 +231,7 @@ fn plants_blueberry_dance() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("plants/blueberry_dance", &context)
+    Template::render("plants/blueberry_dance", json::to_string(&context))
 }
 
 #[get("/plants/botanical-deceptions")]
@@ -238,7 +240,7 @@ fn plants_botanical_deceptions() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("plants/botanical_deceptions", &context)
+    Template::render("plants/botanical_deceptions", json::to_string(&context))
 }
 
 #[get("/plants/potato-tech")]
@@ -247,7 +249,7 @@ fn plants_potato_tech() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("plants/potato_tech", &context)
+    Template::render("plants/potato_tech", json::to_string(&context))
 }
 
 #[get("/projects")]
@@ -256,7 +258,7 @@ fn projects() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("projects", &context)
+    Template::render("projects", json::to_string(&context))
 }
 
 #[get("/support")]
@@ -265,7 +267,7 @@ fn support() -> Template {
         flash_name: None,
         flash_msg: None,
     };
-    Template::render("support", &context)
+    Template::render("support", json::to_string(&context))
 }
 
 #[catch(404)]
@@ -275,15 +277,15 @@ fn not_found() -> Template {
         flash_name: Some("error".to_string()),
         flash_msg: Some("No resource found for given URL".to_string()),
     };
-    Template::render("not_found", context)
+    Template::render("not_found", json::to_string(&context))
 }
 
-fn main() {
-    rocket::ignite()
+#[launch]
+fn rocket() -> _ {
+    rocket::build()
         .mount(
             "/",
             routes![
-                files,
                 art,
                 background,
                 bacteria,
@@ -301,6 +303,7 @@ fn main() {
                 fungi_lichen_space,
                 fungi_network_resilience,
                 fungi_photo_guide,
+                fungi_reading_list,
                 home,
                 lists,
                 meditation,
@@ -313,7 +316,7 @@ fn main() {
                 support
             ],
         )
-        .register(catchers![not_found])
+        .mount("/", FileServer::from(relative!("static")))
+        .register("/", catchers![not_found])
         .attach(Template::fairing())
-        .launch();
 }

templates/base.html.tera

@@ -3,7 +3,7 @@
   <head>
     <meta charset="UTF-8">
     <meta name="viewport" content="width=device-width, initial-scale=1">
-    <link rel="shortcut icon" type="image/png" href="favicon.png"/>
+    <link rel="shortcut icon" type="image/png" href="/favicon.png"/>
     <title>{% block title %}{% endblock title %}</title>
     <meta name="author" content="glyph">
     <meta name="description" content="Welcome to the personal website of glyph: a mycelial technologist coding and cultivating a decentralized, multispecies future. On my site you will find art, musings and projects relating to carbon-based and silicon-based technologies. Sowing seeds of symbiosis, weaving webs of wu wei.">

templates/fungi.html.tera

@@ -19,5 +19,11 @@
         <li><a href="/fungi/photo-guide">Photographing Mushrooms for Identification</a> - <i>25 August, 2020</i></li>
       </ul>
     </div>
+    <h3>Reading List</h3>
+    <div class="card">
+      <ul>
+        <li><a href="/fungi/reading-list">Mycology Reading List</a></li>
+      </ul>
+    </div>
     <hr>
 {%- endblock %}

templates/fungi/reading_list.html.tera

@@ -0,0 +1,24 @@
+{% extends "nav" %}
+{% block title %}mycelial technology | reading list{% endblock title %}
+{% block content %}
+    <h2>Mycology Literature Reading List</h2>
+    <h3>2021</h3>
+    <p>I'm aiming to read 100 mycology journal articles and textbook chapters this year. Any entries marked with a * have been read and discussed as part of the Hyphal Fusion Reading Group.</p>
+    <ol>
+      <li>Hiscox J, O'Leary J, Boddy L (2018). Fungus wars: basidiomycete battles in wood decay. <i>Studies in Mycology</i> <b>89</b>: 117–124. *</li>
+      <li>Crowther TW, Boddy L, Maynard DS (2018). The use of artificial media in fungal ecology. <i>Fungal Ecology</i> <b>32</b>: 87–91.</li>
+      <li>Parfitt D, Hunt J, Dockrell D, <i>et al.</i> (2010). Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees. <i>Fungal Ecology</i>, <b>3</b>: 338–346.</li>
+      <li>Boddy L, Crockatt ME, Ainsworth AM (2011). Ecology of Hericium cirrhatum, H. coralloides and H. erinaceus in the UK. <i>Fungal Ecology</i>, <b>4</b>(2): 163–173.</li>
+      <li>Heaton L, Obara B, Grau V, <i>et al.</i> (2012). Analysis of fungal networks. <i>Fungal Biology Reviews</i>, <b>26</b>(1): 12-29.</i></li>
+      <li>Mueller U, Kardish M, Ishak H, <i>et al.</i> (2018). Phylogenetic patterns of ant–fungus associations indicate that farming strategies, not only a superior fungal cultivar, explain the ecological success of leafcutter ants. <i>Molecular Ecology</i>, <b>27</b>(10): 2414-2434.</li>
+      <li>Yang D, Liang J, Wang Y, <i>et al.</i> (2016). Tea waste: an effective and economic substrate for oyster mushroom cultivation. <i>Journal of the Science of Food and Agriculture</i>, <b>96</b>(2), 680-684.</li>
+      <li>Richter DL, Dixon TG, Smith JK (2016). Revival of saprotrophic and mycorrhizal basidiomycete cultures after 30 years in cold storage in sterile water. <i>Canadian Journal of Microbiology</i>, <b>62</b>(11), 932-937.</li>
+      <li>Schwartz MW, Hoeksema JD, Gehring CA, <i>et al.</i> (2006). The promise and the potential consequences of the global transport of mycorrhizal fungal inoculum. <i>Ecology Letters</i>, <b>9</b>(5), 501-515.</li>
+      <li>Kües U & Liu Y (2000). Fruiting body production in basidiomycetes. <i>Applied Microbiology and Biotechnology</i>, <b>54</b>(2), 141-152.</li>
+      <li>Jusino MA, Lindner DL, Banik MT, <i>et al.</i> (2016). Experimental evidence of a symbiosis between red-cockaded woodpeckers and fungi. <i>Proceedings of the Royal Society B: Biological Sciences</i>, <b>283</b>(1827).
+      <li>Garibay-Orijel R, Ramírez-Terrazo A & Ordaz-Velázquez M. (2012). Women care about local knowledge, experiences from ethnomycology. <i>Journal of Ethnobiology and Ethnomedicine</i>, <b>8</b>(1), 1-13.</li>
+      <li>Raudabaugh DB, Matheny PB, Hughes KW, <i>et al.</i> (2020). Where are they hiding? Testing the body snatchers hypothesis in pyrophilous fungi. <i>Fungal Ecology</i>, <b>43</b>, 100870.</li>
+      <li>Ingham CJ, Kalisman O, Finkelshtein A, Ben-Jacob E (2011). Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex. <i>Proceedings of the National Academy of Sciences</i>, <b>108</b>(49):19731-6.</li>
+    </ol>
+    <hr>
+{%- endblock %}

templates/lists.html.tera

@@ -5,11 +5,16 @@
     <h3>Books</h3>
     <p>Currently Reading</p>
     <ul>
+      <li><i>Finding the Mother Tree</i> - Suzanne Simard</li>
       <li><i>Radical Mycology</i> - Peter McCoy</li>
       <li><i>Jonathan Strange & Mr Norrell</i> - Susanna Clarke</li>
     </ul>
     <p>Previously Read</p>
     <ul>
+      <li><i>How to be Good</i> - Nick Hornby</li>
+      <li><i>Aurora</i> - Kim Stanley Robinson</li>
+      <li><i>Seveneves</i> - Neal Stephenson</li>
+      <li><i>Agency</i> - William Gibson</li>
       <li><i>A Closed and Common Orbit</i> - Becky Chambers</li>
       <li><i>Ready Player One</i> - Ernest Cline</li>
       <li><i>Red Moon</i> - Kim Stanley Robinson</li>
@@ -18,7 +23,18 @@
     </ul>
     <p>Wishlist</p>
     <ul>
-      <li><i>The Mushroom at the End of the World</i> - Anna Lowenhaupt Tsing</li>
+      <li><i>Earth Repair</i> - Leila Darwish</li>
+    </ul>
+    <h3>Manga (漫画)</h3>
+    <p>Currently Reading</p>
+    <ul>
+      <li><i>Dragonball, Vol. 1</i> - 鳥山 明 (Akira Toriyama)</li>
+      <li><i>日常 (Nichijou), Vol. 2</i> - あらゐけいいち (Keiichi Arawi)</li>
+    </ul>
+    <p>Previously Read</p>
+    <ul>
+      <li><i>日常 (Nichijou), Vol. 1</i> - あらゐけいいち (Keiichi Arawi)</li>
+      <li><i>ナルト (Naruto), Vol. 1</i> - 岸本 斉史 (Masashi Kishimoto)</li>
     </ul>
     <h3>Graphic Novels</h3>
     <p>Currently Reading</p>
@@ -28,6 +44,9 @@
     </ul>
     <p>Previously Read</p>
     <ul>
+      <li><i>Seven to Eternity, Vol. 1</i> - Rick Remender, Jerome Opeña and Matt Hollingsworth</li>
+      <li><i>Extremity, Vol. 1</i> - Daniel Warren Johnson and Mike Spicer</li>
+      <li><i>Descender, Vol. 1</i> - Jeff Lemire and Dustin Nguyen</li>
       <li><i>Invisible Kingdom, Vol. 1</i> - G. Willow Wilson and Christian Ward</li>
       <li><i>Isola, Vol. 1</i> - Brenden Fletcher and Karl Kerschl</li>
     </ul>
@@ -49,8 +68,12 @@
     <h3>Podcasts</h3>
     <p>Currently Listening</p>
     <ul>
-      <li><a href="https://www.embedded.fm/" title="Embedded FM"><i>Embedded FM</i></a> - Elecia White and Chris White</li>
+      <li><a href="https://anchor.fm/sayurisaying" title="Everyday-Japanese Podcast"><i>Sayuri Saying Everyday-Japanese Podcast</i></a> - Sayuri</li>
       <li><a href="https://www.indefenseofplants.com/podcast" title="In Defense of Plants podcast"><i>In Defense of Plants</i></a> - Matt</li>
     </ul>
+    <p>Previously Listened</p>
+    <ul>
+      <li><a href="https://www.embedded.fm/" title="Embedded FM"><i>Embedded FM</i></a> - Elecia White and Chris White</li>
+    </ul>
     <hr>
 {%- endblock %}

templates/nav.html.tera

@@ -18,6 +18,6 @@
     </nav>
     {%- block content %}{%- endblock %}
     <footer style="display: flex;">
-      <p>&#169; 2020 glyph<p> 
+      <p>&#169; 2021 glyph<p> 
     </footer>
 {%- endblock %}

templates/projects.html.tera

@@ -5,13 +5,14 @@
     <p>I'm a tortoise and I shuffle between projects in eccentric orbits; sometimes I complete one.</p>
     <h3>Active</h3>
     <ul>
+      <li><a href="https://github.com/ssb-ngi-pointer">Next Generation Internet (NGI) Pointer</a>: Scuttlebutt protocol upgrades</li>
       <li><a href="https://opencollective.com/peachcloud">PeachCloud</a>: solarpunk social hardware with Scuttlebutt</li>
       <li><a href="https://hyphalfusion.network">Hyphal Fusion Network</a>: a forum for distributed mycology research</li>
-      <li><a href="https://git.sr.ht/~glyph/myka">myka</a>: culture library & cultivation log for tracking the expansion of mycelia</li>
-      <li><a href="https://git.sr.ht/~glyph/spore">spore</a>: a manual for the mycelial arts</li>
     </ul>
     <h3>On-hold</h3>
     <ul>
+      <li><a href="https://git.sr.ht/~glyph/myka">myka</a>: culture library & cultivation log for tracking the expansion of mycelia</li>
+      <li><a href="https://git.sr.ht/~glyph/spore">spore</a>: a manual for the mycelial arts</li>
       <li><a href="https://two.camp.scuttlebutt.nz/">Scuttlecamp 2</a>: gathering of the Butts</li>
     </ul>
     <h3>Complete</h3>

templates/support.html.tera

@@ -11,8 +11,7 @@
     <h2>Supporting</h2>
     <p>These are the projects and friends I currently contribute to:</p>
     <ul>
-      <li>@cel - $5 per month for <a href="https://celehner.com/projects.html" title="cel's Projects">Scuttlebutt</a> development</li>
-      <li>@SoapDog - $5 per month for <a href="http://patchfox.org" title="PatchFox Website">PatchFox</a> development</li>
+      <li>Yuki Kimura - $5 per month for <a href="https://cijapanese.com" title="Comprehensive Japanese">Comprehensive Japanese</a></li>
       <li>Joey Santore - $5 per month for <a href="https://www.patreon.com/CrimePaysButBotanyDoesnt" title="Crime Pays But Botany Doesn't Patreon">Crime Pays But Botany Doesn't</a></li>
     </ul>
     <hr>